HL_9GHD_045

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9GHD|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHD_045 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0642

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9GHD|1|a|A|382
9GHD|1|a|C|383
9GHD|1|a|A|384
9GHD|1|a|C|385
9GHD|1|a|G|386
9GHD|1|a|U|387
9GHD|1|a|G|388
9GHD|1|a|G|389
9GHD|1|a|U|390
9GHD|1|a|A|391
9GHD|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L28