HL_9GHG_013

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GCACGUGAAAU

Length

11 nucleotides

Bulged bases

9GHG|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_013 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1628

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9GHG|1|A|G|428
9GHG|1|A|C|429
9GHG|1|A|A|430
9GHG|1|A|C|431
9GHG|1|A|G|432
9GHG|1|A|U|433
9GHG|1|A|G|434
9GHG|1|A|A|435
9GHG|1|A|A|436
9GHG|1|A|A|437
9GHG|1|A|U|438

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain D

Transfer RNA; tRNA