HL_9GHG_075

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

9GHG|1|F|C|16, 9GHG|1|F|G|18, 9GHG|1|F|G|19, 9GHG|1|F|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_075 not in the Motif Atlas

Homologous match to HL_9DFC_103

Geometric discrepancy: 0.152

The information below is about HL_9DFC_103

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9GHG|1|F|C|13
9GHG|1|F|A|14
9GHG|1|F|G|15
9GHG|1|F|C|16
9GHG|1|F|C|17
9GHG|1|F|U|17|||A
9GHG|1|F|G|18
9GHG|1|F|G|19
9GHG|1|F|U|20
9GHG|1|F|A|21
9GHG|1|F|G|22

Current chains

Chain F

E-site tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain J

50S ribosomal protein L5