HL_9GHG_090

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

AAGUAACUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHG_090 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3325

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9GHG|1|a|A|470
9GHG|1|a|A|471
9GHG|1|a|G|472
9GHG|1|a|U|473
9GHG|1|a|A|474
9GHG|1|a|A|475
9GHG|1|a|C|476
9GHG|1|a|U|477
9GHG|1|a|G|478
9GHG|1|a|U|479

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

30S ribosomal protein S16