3D structure

PDB id
9GHH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UGUAAGUAA
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GHH_002 not in the Motif Atlas
Homologous match to HL_4WF9_002
Geometric discrepancy: 0.2798
The information below is about HL_4WF9_002
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_77600.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

9GHH|1|A|U|87
9GHH|1|A|G|88
9GHH|1|A|U|89
9GHH|1|A|A|90
9GHH|1|A|A|91
9GHH|1|A|G|92
9GHH|1|A|U|93
9GHH|1|A|A|94
9GHH|1|A|A|95

Current chains

Chain A
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L29
Chain W
50S ribosomal protein L23
Chain X
50S ribosomal protein L24

Coloring options:


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