HL_9GHH_054

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_054 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.2652

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9GHH|1|A|G|2331
9GHH|1|A|U|2332
9GHH|1|A|U|2333
9GHH|1|A|G|2334
9GHH|1|A|G|2335
9GHH|1|A|A|2336
9GHH|1|A|A|2337
9GHH|1|A|A|2338
9GHH|1|A|U|2339

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L5