HL_9GHH_065

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9GHH|1|A|G|2778, 9GHH|1|A|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GHH_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0689

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9GHH|1|A|C|2772
9GHH|1|A|U|2773
9GHH|1|A|G|2774
9GHH|1|A|A|2775
9GHH|1|A|A|2776
9GHH|1|A|A|2777
9GHH|1|A|G|2778
9GHH|1|A|C|2779
9GHH|1|A|A|2780
9GHH|1|A|U|2781
9GHH|1|A|C|2782
9GHH|1|A|U|2783
9GHH|1|A|A|2784
9GHH|1|A|A|2785
9GHH|1|A|G|2786

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

50S ribosomal protein L6

Chain M

50S ribosomal protein L13