HL_9GMO_001
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 9GMO|1|A|A|39, 9GMO|1|A|A|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GMO_001 not in the Motif Atlas
- Homologous match to HL_8P9A_113
- Geometric discrepancy: 0.0908
- The information below is about HL_8P9A_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
9GMO|1|A|U|37
9GMO|1|A|A|38
9GMO|1|A|A|39
9GMO|1|A|G|40
9GMO|1|A|C|41
9GMO|1|A|A|42
9GMO|1|A|U|43
9GMO|1|A|A|44
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain U
- 60S ribosomal protein L27a
- Chain i
- 60S ribosomal protein L36a
- Chain l
- 60S ribosomal protein L15
- Chain r
- 60S ribosomal protein L13
Coloring options: