HL_9GMO_012

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

9GMO|1|A|U|1179, 9GMO|1|A|C|1180, 9GMO|1|A|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_012 not in the Motif Atlas

Geometric match to HL_1ZBH_001

Geometric discrepancy: 0.2035

The information below is about HL_1ZBH_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

9GMO|1|A|G|1178
9GMO|1|A|U|1179
9GMO|1|A|C|1180
9GMO|1|A|C|1181
9GMO|1|A|C|1182
9GMO|1|A|C|1183

Current chains

Chain A

28S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain G

60S ribosomal protein L5

Chain p

Large ribosomal subunit protein uL16