HL_9GMO_013

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCUUG(1MA)(A2M)AC(A2M)

Length

10 nucleotides

Bulged bases

9GMO|1|A|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_013 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0924

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9GMO|1|A|U|1317
9GMO|1|A|C|1318
9GMO|1|A|U|1319
9GMO|1|A|U|1320
9GMO|1|A|G|1321
9GMO|1|A|1MA|1322
9GMO|1|A|A2M|1323
9GMO|1|A|A|1324
9GMO|1|A|C|1325
9GMO|1|A|A2M|1326

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain U

60S ribosomal protein L27a

Chain Y

60S ribosomal protein L32