HL_9GMO_021

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

9GMO|1|A|C|1676, 9GMO|1|A|A|1679

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_021 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.327

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

9GMO|1|A|C|1675
9GMO|1|A|C|1676
9GMO|1|A|PSU|1677
9GMO|1|A|C|1678
9GMO|1|A|A|1679
9GMO|1|A|G|1680

Current chains

Chain A

28S rRNA

Nearby chains

Chain U

60S ribosomal protein L27a

Chain V

60S ribosomal protein L29

Chain i

60S ribosomal protein L36a