3D structure

PDB id
9GMO (explore in PDB, NAKB, or RNA 3D Hub)
Description
eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
Experimental method
ELECTRON MICROSCOPY
Resolution
2.59 Å

Loop

Sequence
AG(OMC)A(OMG)UU
Length
7 nucleotides
Bulged bases
9GMO|1|A|G|2421, 9GMO|1|A|U|2425
QA status
Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GMO_028 not in the Motif Atlas
Homologous match to HL_8C3A_032
Geometric discrepancy: 0.189
The information below is about HL_8C3A_032
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_40756.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

9GMO|1|A|A|2420
9GMO|1|A|G|2421
9GMO|1|A|OMC|2422
9GMO|1|A|A|2423
9GMO|1|A|OMG|2424
9GMO|1|A|U|2425
9GMO|1|A|U|2426

Current chains

Chain A
28S rRNA

Nearby chains

Chain J
60S ribosomal protein L17
Chain L
60S ribosomal protein L19
Chain f
60S ribosomal protein L39

Coloring options:


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