HL_9GMO_034

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUUCUCUU(PSU)

Length

9 nucleotides

Bulged bases

9GMO|1|A|U|2631

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_034 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.237

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9GMO|1|A|G|2624
9GMO|1|A|U|2625
9GMO|1|A|U|2626
9GMO|1|A|C|2627
9GMO|1|A|U|2628
9GMO|1|A|C|2629
9GMO|1|A|U|2630
9GMO|1|A|U|2631
9GMO|1|A|PSU|2632

Current chains

Chain A

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L19

Chain O

60S ribosomal protein L22