HL_9GMO_039

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUUC(OMG)G

Length

6 nucleotides

Bulged bases

9GMO|1|A|U|2874

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_039 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0903

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9GMO|1|A|C|2872
9GMO|1|A|U|2873
9GMO|1|A|U|2874
9GMO|1|A|C|2875
9GMO|1|A|OMG|2876
9GMO|1|A|G|2877

Current chains

Chain A

28S rRNA

Nearby chains

Chain j

60S ribosomal protein L37a