HL_9GMO_060

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

9GMO|1|A|A|4910, 9GMO|1|A|A|4911, 9GMO|1|A|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GMO_060 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1023

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9GMO|1|A|G|4907
9GMO|1|A|G|4908
9GMO|1|A|A|4909
9GMO|1|A|A|4910
9GMO|1|A|A|4911
9GMO|1|A|G|4912
9GMO|1|A|G|4913
9GMO|1|A|C|4914

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain I

60S ribosomal protein L13a