HL_9GMO_062
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GMO_062 not in the Motif Atlas
- Geometric match to HL_1MJI_004
- Geometric discrepancy: 0.1424
- The information below is about HL_1MJI_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.3
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9GMO|1|B|A|32
9GMO|1|B|U|33
9GMO|1|B|C|34
9GMO|1|B|U|35
9GMO|1|B|C|36
9GMO|1|B|G|37
9GMO|1|B|U|38
9GMO|1|B|C|39
9GMO|1|B|U|40
9GMO|1|B|G|41
9GMO|1|B|A|42
9GMO|1|B|U|43
9GMO|1|B|C|44
9GMO|1|B|U|45
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 60S ribosomal protein L5
- Chain q
- 60S ribosomal protein L11
Coloring options: