HL_9GR1_030
3D structure
- PDB id
- 9GR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-TEC complex in delivery state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 9GR1|1|Y|G|18, 9GR1|1|Y|G|19, 9GR1|1|Y|H2U|20
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GR1_030 not in the Motif Atlas
- Homologous match to HL_9DFC_103
- Geometric discrepancy: 0.1739
- The information below is about HL_9DFC_103
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9GR1|1|Y|C|13
9GR1|1|Y|A|14
9GR1|1|Y|G|15
9GR1|1|Y|C|16
9GR1|1|Y|C|17
9GR1|1|Y|U|17|||A
9GR1|1|Y|G|18
9GR1|1|Y|G|19
9GR1|1|Y|H2U|20
9GR1|1|Y|A|21
9GR1|1|Y|G|22
Current chains
- Chain Y
- tRNA(fmet) P-site
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
Coloring options: