HL_9GXX_045
3D structure
- PDB id
- 9GXX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.61 Å
Loop
- Sequence
- UGAAUCCAUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GXX_045 not in the Motif Atlas
- Homologous match to HL_5J7L_138
- Geometric discrepancy: 0.1025
- The information below is about HL_5J7L_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68257.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9GXX|1|a|U|158
9GXX|1|a|G|159
9GXX|1|a|A|160
9GXX|1|a|A|161
9GXX|1|a|U|162
9GXX|1|a|C|163
9GXX|1|a|C|164
9GXX|1|a|A|165
9GXX|1|a|U|166
9GXX|1|a|A|167
9GXX|1|a|G|168
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: