HL_9GXX_052

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9GXX|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GXX_052 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0634

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9GXX|1|a|A|382
9GXX|1|a|C|383
9GXX|1|a|A|384
9GXX|1|a|C|385
9GXX|1|a|G|386
9GXX|1|a|U|387
9GXX|1|a|G|388
9GXX|1|a|G|389
9GXX|1|a|U|390
9GXX|1|a|A|391
9GXX|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

Large ribosomal subunit protein bL28