3D structure

PDB id
9GXX (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.61 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
9GXX|1|a|A|1913||A
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GXX_085 not in the Motif Atlas
Homologous match to HL_9DFE_046
Geometric discrepancy: 0.1091
The information below is about HL_9DFE_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

9GXX|1|a|G|1910
9GXX|1|a|PSU|1911
9GXX|1|a|A|1912
9GXX|1|a|A|1913||A
9GXX|1|a|C|1914||A
9GXX|1|a|3TD|1915
9GXX|1|a|A|1916
9GXX|1|a|PSU|1917
9GXX|1|a|A|1918
9GXX|1|a|A|1919
9GXX|1|a|C|1920

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain Y
Transfer RNA; tRNA
Chain Z
Transfer RNA; tRNA

Coloring options:


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