HL_9GY4_008
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 9GY4|1|5|G|294, 9GY4|1|5|A|295, 9GY4|1|5|A|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GY4_008 not in the Motif Atlas
- Homologous match to HL_8CRE_008
- Geometric discrepancy: 0.1282
- The information below is about HL_8CRE_008
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_77436.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
9GY4|1|5|C|289
9GY4|1|5|U|290
9GY4|1|5|U|291
9GY4|1|5|G|292
9GY4|1|5|G|293
9GY4|1|5|G|294
9GY4|1|5|A|295
9GY4|1|5|A|296
9GY4|1|5|U|297
9GY4|1|5|G|298
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Lo
- 60S ribosomal protein L36a
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