HL_9GY4_035
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUUCUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 9GY4|1|5|U|2631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GY4_035 not in the Motif Atlas
- Homologous match to HL_8CRE_036
- Geometric discrepancy: 0.2226
- The information below is about HL_8CRE_036
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- Pseudoknot geometry
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9GY4|1|5|G|2624
9GY4|1|5|U|2625
9GY4|1|5|U|2626
9GY4|1|5|C|2627
9GY4|1|5|U|2628
9GY4|1|5|C|2629
9GY4|1|5|U|2630
9GY4|1|5|U|2631
9GY4|1|5|U|2632
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- E3 ubiquitin-protein ligase listerin
- Chain LR
- 60S ribosomal protein L19
- Chain LU
- 60S ribosomal protein L22
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