HL_9GY4_056

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9GY4|1|5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GY4_056 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.1379

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9GY4|1|5|A|4474
9GY4|1|5|G|4475
9GY4|1|5|C|4476
9GY4|1|5|A|4477
9GY4|1|5|G|4478
9GY4|1|5|A|4479
9GY4|1|5|A|4480
9GY4|1|5|U|4481

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

E3 ubiquitin-protein ligase listerin

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40