HL_9H3O_017

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

9H3O|1|A|U|571, 9H3O|1|A|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3O_017 not in the Motif Atlas

Homologous match to HL_9DFE_016

Geometric discrepancy: 0.5068

The information below is about HL_9DFE_016

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

9H3O|1|A|U|566
9H3O|1|A|U|567
9H3O|1|A|U|568
9H3O|1|A|U|569
9H3O|1|A|G|570
9H3O|1|A|U|571
9H3O|1|A|A|572
9H3O|1|A|U|573
9H3O|1|A|A|574
9H3O|1|A|A|575

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15

Chain R

Large ribosomal subunit protein bL21