HL_9H3O_032

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9H3O|1|A|G|1452, 9H3O|1|A|A|1453, 9H3O|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3O_032 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.3981

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9H3O|1|A|C|1451
9H3O|1|A|G|1452
9H3O|1|A|A|1453
9H3O|1|A|C|1454
9H3O|1|A|G|1455
9H3O|1|A|G|1456
9H3O|1|A|U|1457
9H3O|1|A|U|1458
9H3O|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17