HL_9H3P_016

3D structure

PDB id

9H3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

7.06 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

9H3P|1|A|C|544, 9H3P|1|A|U|545, 9H3P|1|A|U|546, 9H3P|1|A|A|547, 9H3P|1|A|G|548, 9H3P|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3P_016 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3936

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9H3P|1|A|G|543
9H3P|1|A|C|544
9H3P|1|A|U|545
9H3P|1|A|U|546
9H3P|1|A|A|547
9H3P|1|A|G|548
9H3P|1|A|G|549
9H3P|1|A|C|550

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain R

Large ribosomal subunit protein bL21