3D structure

PDB id
9H3Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S subunit precursor C-CP_YjgA_(L22)-~H61
Experimental method
ELECTRON MICROSCOPY
Resolution
4.02 Å

Loop

Sequence
GGACCAUC
Length
8 nucleotides
Bulged bases
9H3Q|1|A|G|411
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9H3Q_012 not in the Motif Atlas
Homologous match to HL_7A0S_014
Geometric discrepancy: 0.17
The information below is about HL_7A0S_014
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_30680.3
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
15

Unit IDs

9H3Q|1|A|G|410
9H3Q|1|A|G|411
9H3Q|1|A|A|412
9H3Q|1|A|C|413
9H3Q|1|A|C|414
9H3Q|1|A|A|415
9H3Q|1|A|U|416
9H3Q|1|A|C|417

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain L
Large ribosomal subunit protein uL15

Coloring options:


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