HL_9H3Q_021

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

9H3Q|1|A|U|747, 9H3Q|1|A|A|751, 9H3Q|1|A|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3Q_021 not in the Motif Atlas

Homologous match to HL_9DFE_021

Geometric discrepancy: 0.3663

The information below is about HL_9DFE_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

9H3Q|1|A|U|744
9H3Q|1|A|G|745
9H3Q|1|A|U|746
9H3Q|1|A|U|747
9H3Q|1|A|G|748
9H3Q|1|A|A|749
9H3Q|1|A|A|750
9H3Q|1|A|A|751
9H3Q|1|A|A|752
9H3Q|1|A|A|753

Current chains

Chain A

23S ribosomal RNA

Nearby chains