HL_9H3Q_025

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3Q_025 not in the Motif Atlas

Homologous match to HL_9DFE_026

Geometric discrepancy: 0.3307

The information below is about HL_9DFE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9H3Q|1|A|G|978
9H3Q|1|A|A|979
9H3Q|1|A|A|980
9H3Q|1|A|A|981
9H3Q|1|A|C|982
9H3Q|1|A|A|983
9H3Q|1|A|A|984
9H3Q|1|A|C|985

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21