HL_9H3Q_048

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9H3Q|1|A|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3Q_048 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1454

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9H3Q|1|A|U|2404
9H3Q|1|A|G|2405
9H3Q|1|A|A|2406
9H3Q|1|A|A|2407
9H3Q|1|A|U|2408
9H3Q|1|A|G|2409
9H3Q|1|A|G|2410
9H3Q|1|A|A|2411
9H3Q|1|A|A|2412
9H3Q|1|A|G|2413

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15