HL_9H3S_005

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3S_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2047

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9H3S|1|A|U|158
9H3S|1|A|G|159
9H3S|1|A|A|160
9H3S|1|A|A|161
9H3S|1|A|U|162
9H3S|1|A|C|163
9H3S|1|A|C|164
9H3S|1|A|A|165
9H3S|1|A|U|166
9H3S|1|A|A|167
9H3S|1|A|G|168

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

Large ribosomal subunit protein bL28