HL_9H3S_011

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9H3S|1|A|G|386

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3S_011 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1889

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9H3S|1|A|A|382
9H3S|1|A|C|383
9H3S|1|A|A|384
9H3S|1|A|C|385
9H3S|1|A|G|386
9H3S|1|A|U|387
9H3S|1|A|G|388
9H3S|1|A|G|389
9H3S|1|A|U|390
9H3S|1|A|A|391
9H3S|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

UPF0307 protein YjgA

Chain X

Large ribosomal subunit protein bL28