HL_9H3W_023

3D structure

PDB id

9H3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_H68

Experimental method

ELECTRON MICROSCOPY

Resolution

5.38 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

9H3W|1|A|A|781, 9H3W|1|A|G|784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H3W_023 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.2254

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

9H3W|1|A|U|779
9H3W|1|A|G|780
9H3W|1|A|A|781
9H3W|1|A|A|782
9H3W|1|A|A|783
9H3W|1|A|G|784
9H3W|1|A|G|785

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2