HL_9H51_012

3D structure

PDB id

9H51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

9H51|1|A|C|1151, 9H51|1|A|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H51_012 not in the Motif Atlas

Geometric match to HL_5E08_001

Geometric discrepancy: 0.3776

The information below is about HL_5E08_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9H51|1|A|C|1150
9H51|1|A|C|1151
9H51|1|A|A|1152
9H51|1|A|C|1153
9H51|1|A|A|1154
9H51|1|A|G|1155

Current chains

Chain A

RNA (969-MER)

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain L

28S ribosomal protein S15, mitochondrial

Chain c

Pseudouridylate synthase 1 homolog