HL_9H6Y_002
3D structure
- PDB id
- 9H6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCCAU(T6A)AC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: T6A
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9H6Y_002 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.118
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9H6Y|1|1|G|31
9H6Y|1|1|C|32
9H6Y|1|1|C|33
9H6Y|1|1|C|34
9H6Y|1|1|A|35
9H6Y|1|1|U|36
9H6Y|1|1|T6A|37
9H6Y|1|1|A|38
9H6Y|1|1|C|39
Current chains
- Chain 1
- Initiator methionylated tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- Linear mRNA
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
- Chain R
- Small ribosomal subunit protein uS19
- Chain S
- Small ribosomal subunit protein uS9
- Chain j
- Eukaryotic translation initiation factor 4C
- Chain o
- Eukaryotic translation initiation factor 5
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