HL_9H6Y_008

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9H6Y|1|2|U|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H6Y_008 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.2639

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9H6Y|1|2|G|279
9H6Y|1|2|G|280
9H6Y|1|2|U|281
9H6Y|1|2|G|282
9H6Y|1|2|A|283
9H6Y|1|2|C|284
9H6Y|1|2|U|285
9H6Y|1|2|C|286

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain I

Small ribosomal subunit protein eS6

Chain N

Small ribosomal subunit protein uS17