HL_9H6Y_014

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9H6Y|1|2|A|490, 9H6Y|1|2|C|492, 9H6Y|1|2|C|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H6Y_014 not in the Motif Atlas

Homologous match to HL_9PN5_088

Geometric discrepancy: 0.2334

The information below is about HL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9H6Y|1|2|C|488
9H6Y|1|2|G|489
9H6Y|1|2|A|490
9H6Y|1|2|C|491
9H6Y|1|2|C|492
9H6Y|1|2|C|493
9H6Y|1|2|G|494

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS4

Chain a

40S ribosomal protein S24