HL_9H6Y_016

3D structure

PDB id

9H6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late-stage 48S Initiation Complex (LS48S IC) guided by the trans-RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6Y|1|2|A|559
9H6Y|1|2|C|560
9H6Y|1|2|U|561
9H6Y|1|2|U|562
9H6Y|1|2|U|563
9H6Y|1|2|A|564
9H6Y|1|2|A|565
9H6Y|1|2|A|566
9H6Y|1|2|U|567
9H6Y|1|2|C|568
9H6Y|1|2|C|569
9H6Y|1|2|U|570
9H6Y|1|2|U|571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS4

Chain a

40S ribosomal protein S24