HL_9H9I_010

3D structure

PDB id

9H9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 2 (HEAD) 30S-IF1-IF3-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

9H9I|1|1|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9I_010 not in the Motif Atlas

Geometric match to HL_5J7L_029

Geometric discrepancy: 0.101

The information below is about HL_5J7L_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9H9I|1|1|G|1356
9H9I|1|1|A|1357
9H9I|1|1|U|1358
9H9I|1|1|C|1359
9H9I|1|1|A|1360
9H9I|1|1|G|1361
9H9I|1|1|A|1362
9H9I|1|1|A|1363
9H9I|1|1|U|1364
9H9I|1|1|G|1365
9H9I|1|1|C|1366

Current chains

Chain 1

16S RNA (head domain)

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14