HL_9H9M_005

3D structure

PDB id

9H9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9H9M|1|1|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9M_005 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.1275

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9H9M|1|1|G|1089
9H9M|1|1|U|1090
9H9M|1|1|U|1091
9H9M|1|1|A|1092
9H9M|1|1|A|1093
9H9M|1|1|G|1094
9H9M|1|1|U|1095
9H9M|1|1|C|1096

Current chains

Chain 1

16S RNA (1542-MER)

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain G

Small ribosomal subunit protein uS7