HL_9HA1_005

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA1_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.4216

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9HA1|1|A|U|158
9HA1|1|A|G|159
9HA1|1|A|A|160
9HA1|1|A|A|161
9HA1|1|A|U|162
9HA1|1|A|C|163
9HA1|1|A|C|164
9HA1|1|A|A|165
9HA1|1|A|U|166
9HA1|1|A|A|167
9HA1|1|A|G|168

Current chains

Chain A

23S ribosomal RNA

Nearby chains