HL_9HA4_030

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9HA4|1|A|A|1453, 9HA4|1|A|C|1454

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA4_030 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.2016

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9HA4|1|A|C|1451
9HA4|1|A|G|1452
9HA4|1|A|A|1453
9HA4|1|A|C|1454
9HA4|1|A|G|1455
9HA4|1|A|G|1456
9HA4|1|A|U|1457
9HA4|1|A|U|1458
9HA4|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17