HL_9HA4_039

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9HA4|1|A|A|2267, 9HA4|1|A|A|2268, 9HA4|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA4_039 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1924

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9HA4|1|A|C|2264
9HA4|1|A|U|2265
9HA4|1|A|A|2266
9HA4|1|A|A|2267
9HA4|1|A|A|2268
9HA4|1|A|G|2269
9HA4|1|A|A|2270
9HA4|1|A|G|2271
9HA4|1|A|U|2272
9HA4|1|A|A|2273
9HA4|1|A|A|2274
9HA4|1|A|C|2275
9HA4|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain W

Large ribosomal subunit protein bL27