HL_9HA4_044

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9HA4|1|A|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA4_044 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.2437

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9HA4|1|A|U|2404
9HA4|1|A|G|2405
9HA4|1|A|A|2406
9HA4|1|A|A|2407
9HA4|1|A|U|2408
9HA4|1|A|G|2409
9HA4|1|A|G|2410
9HA4|1|A|A|2411
9HA4|1|A|A|2412
9HA4|1|A|G|2413

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15