HL_9HA4_051

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

9HA4|1|B|G|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA4_051 not in the Motif Atlas

Homologous match to HL_9DFE_068

Geometric discrepancy: 0.442

The information below is about HL_9DFE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9HA4|1|B|C|38
9HA4|1|B|A|39
9HA4|1|B|U|40
9HA4|1|B|G|41
9HA4|1|B|C|42
9HA4|1|B|C|43
9HA4|1|B|G|44

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

Large ribosomal subunit protein uL5

Chain O

Large ribosomal subunit protein uL18