HL_9HA6_006

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9HA6|1|A|A|196, 9HA6|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.1738

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9HA6|1|A|G|194
9HA6|1|A|A|195
9HA6|1|A|A|196
9HA6|1|A|A|197
9HA6|1|A|C|198
9HA6|1|A|A|199
9HA6|1|A|U|200
9HA6|1|A|C|201

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL28