HL_9HA6_007

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

9HA6|1|A|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_007 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.2788

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

9HA6|1|A|C|225
9HA6|1|A|A|226
9HA6|1|A|A|227
9HA6|1|A|C|228
9HA6|1|A|C|229
9HA6|1|A|G|230

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15