HL_9HA6_010

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9HA6|1|A|G|329, 9HA6|1|A|A|330, 9HA6|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_010 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.167

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9HA6|1|A|G|327
9HA6|1|A|U|328
9HA6|1|A|G|329
9HA6|1|A|A|330
9HA6|1|A|C|331
9HA6|1|A|A|332
9HA6|1|A|G|333
9HA6|1|A|C|334
9HA6|1|A|C|335

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24