HL_9HA6_027

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GCUUAUGC

Length

8 nucleotides

Bulged bases

9HA6|1|A|U|1174, 9HA6|1|A|A|1175

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_027 not in the Motif Atlas

Geometric match to HL_7A0S_007

Geometric discrepancy: 0.3208

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

9HA6|1|A|G|1171
9HA6|1|A|C|1172
9HA6|1|A|U|1173
9HA6|1|A|U|1174
9HA6|1|A|A|1175
9HA6|1|A|U|1176
9HA6|1|A|G|1177
9HA6|1|A|C|1178

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15