HL_9HA6_037

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9HA6|1|A|A|1614, 9HA6|1|A|A|1616, 9HA6|1|A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_037 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1162

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9HA6|1|A|C|1612
9HA6|1|A|G|1613
9HA6|1|A|A|1614
9HA6|1|A|C|1615
9HA6|1|A|A|1616
9HA6|1|A|C|1617
9HA6|1|A|A|1618
9HA6|1|A|G|1619

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain S

Large ribosomal subunit protein uL22

Chain z

Apidaecins type 22